Bioinformatics Pipeline Engineer

Company: Recruiting From Scratch
Location: San Francisco
Posted on: March 18, 2025

Job Description:

Who is :Recruiting from Scratch is a talent firm that focuses on placing the best candidate for our clients. Our team is 100% remote and we work with teams across North America, South America, and Europe to help them hire.https://www.recruitingfromscratch.com/Bioinformatics Pipeline EngineerLocation: South San Francisco, CA
Company Stage: Series A Biotech Company
Office Type: Onsite
Salary Range: $155,000 - $200,000 + EquityCompany Description
Our client is a rapidly growing, venture-backed biotech company revolutionizing DNA sequencing services. Their innovative technology enables overnight sequencing of whole plasmids, bacterial genomes, and colonies without primers or minipreps. With a global network of labs and thousands of daily users including leading scientists and biotech innovators, they're accelerating scientific discoveries that contribute to a healthier planet.What You Will Do

• Design and develop robust bioinformatics pipelines focusing on Oxford Nanopore sequencing data
• Drive optimization of pipeline performance, reliability, and scalability using industry best practices
• Collaborate with cross-functional teams of scientists and engineers to implement specific pipeline goals
• Troubleshoot complex biological and sequencing artifacts while maintaining high coding standards
• Provide technical leadership in pipeline usage and support training initiatives
• Evaluate and integrate cutting-edge bioinformatics tools to enhance pipeline capabilitiesIdeal Candidate Background
  • 3+ years of experience developing production-grade bioinformatics pipelines
  • Advanced degree in Bioinformatics, Biostatistics, or related field
  • Strong foundation in workflow languages, particularly Snakemake or Nextflow
  • Hands-on experience with Oxford Nanopore and Illumina sequencing technologies
  • Demonstrated expertise in Python, Bash, Conda, AWS, and GitHub Actions
  • Track record of building and optimizing pipelines for commercial applicationsPreferred Qualifications
    • Experience with Docker/Apptainer/Singularity containerization
    • AWS cloud infrastructure knowledge (Lambda, S3, RDS)
    • Background in developing REST APIs
    • Experience in a fast-paced biotech environmentCompensation & Benefits
      • Competitive salary range: $155,000 - $200,000
      • Equity through Employee Stock Options
      • Comprehensive health, dental, and vision coverage
      • 401(k) with company matching
      • 4 weeks PTO + 10 paid holidays
      • Mental health benefits and gym membership
      • Professional development opportunitiesJoin a dynamic team that's pushing the boundaries of DNA sequencing technology. This role offers the opportunity to make a significant impact in a rapidly growing field while working with cutting-edge technologies.
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Keywords: Recruiting From Scratch, San Francisco , Bioinformatics Pipeline Engineer, Engineering , San Francisco, California